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Science at the Edge Seminar (cancelled)

This seminar has been cancelled due to illness.

Speaker: Sunduz Keles, Department of Biostatistics & Medical Informatics and Department of Statistics, University of Wisconsin, Madison

Title: Statistical Data Integration for Genomics and Epigenomics

Refreshments at 11:15 am.

Abstract:
My group works on high dimensional statistical genomics and epigenomics with a specific emphasis on data integration problems. In this seminar, I will present our statistical approaches for NGS read-level data integration for studying repetitive regions of the genome and data integration for genomewide-association studies.

References:

  • X. Zeng, B. Li, R. Welch, C. Rojo-Alfaro, Y. Zheng, C. Dewey, and S. Keles. Perm-seq: Mapping protein-DNA interactions in segmental duplication and highly repetitive regions of genomes with prior-enhanced read mapping. PLoS Computational Biology, 11(1O):e1004491, 2015.
  • C. Zuo, S. Shin, and S. Keles. atSNP: transcription factor binding affinity testing for regulatory SNP detection. Bioinformatics, 31(20):3353-5, 2015.
  • S. Shin and S. Keles. Annotation regression for genome-wide association studies with an application to psychiatric genomic consortium data. Statistics in Biosciences, 1-23, 2016.
  • P. Liu, R. Sanalkumar, E. H. Bresnick, S. Keles*. and C. N. Dewey*. Integrative analysis with ChiP-seq advances the limits of transcript quantification from RNA-seq. Genome Research, 26(8): 1124-1133, 2016.
Date: 
Fri, 28 Apr 2017, 11:30 am - 12:30 pm  
Type: 
Seminar
Location: 
1400 BPS Bldg.
Speaker: 
Sunduz Keles, University of Wisconsin, Madison

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